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Main Publications See bottom of the page for additional publications
S. Tur, C.G.Palii & M. Brand.
Cell Fate Decision in Erythropoiesis: Insights from Multi-Omics Studies. Experimental Hematology (2024) Jan 21:104167. doi: 10.1016/j.exphem.2024.104167.
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A. Benyoucef*, J.J. Haigh & M. Brand*.
Unveiling the Complexity of Transcription Factor Networks in Hematopoietic Stem Cells: Implications
for Cell Therapy and Hematological Malignancies. *Co-corresponding. Frontiers in Oncology, Hematological Malignancies (2023) Vol. 13.
https://doi.org/10.3389/fonc.2023.1151343
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Q. Zhang & M. Brand.
The Winding Road Towards Transcriptional Repression. Molecular Cell (2023) 83(5):653-654
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M.M. Jung, S.S. Shen, G.A. Botten, T. Olender, K.R. Katsumura, K.D. Johnson, A.A. Soukup,
P. Liu, Q.Zhang, Z.D. Jensvold, P.W. Lewis, R.A. Beagrie, J.K.K. Low, L. Yang, J.P. Mackay, L.A. Godley, M. Brand, J. Xu,
S. Keles & E.H. Bresnick. Pathogenic
Human Variant that Dislocates GATA2 Zinc Fingers Disrupts Hematopoietic Gene Expression and Signaling Networks. Journal of Clinical Investigation (2023) 133(7):e16268.
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M. Brand. Epigenetic Plasticity of Erythroid Progenitors. Blood
(2021) 138(18): 1646-1648.
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D. Iskander, G. Wang, E.F. Heuston, C. Christodoulidou, B. Psaila, K. Ponnusamy, H. Ren,
Z. Mokhtari, M. Robinson, A. Chaidos, P. Trivadi, N. Trasanidis, A. Katsarou, R. Szydlo, NISC Comparative Sequencing Program,
C.G. Palii, M. Ziadi, Q. Al-Oqaily, V. Caputo, A. Roy, Y. Harrington, L. Karnik, K. Naresh, A.J. Mead, S. Thongjuea, M. Brand,
J. de la Fuente, D.M. Bodine, I. Roberts & A. Karadimitris.
Single-Cell Profiling of Human Bone Marrow Progenitors reveals Mechanisms of Failing Erythropoiesis in Diamond-Blackfan Anemia. Science Translational Medicine
(2021) 13(610): eabf0113.
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Y. Li, K. Nakka, T. Olender, P. Gingras-Gelinas, M.K. Wong, D.C.L. Robinson, H. Bandukwala,
O. Neyret, M. Brand, A. Blais & F.J. Dilworth. Chromatin and Transcription Factor Profiling in Rare Stem Cell Populations using CUT&Tag. STAR Protocols (2021) 2(3): 100751.
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M. Brand & J.A. Ranish.
Proteomic / Transcriptomic Analysis of Erythropoiesis. Current Opinion in Hematology (2021) 28(3): 150-157.
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M.A.
Gillespie, C.G. Palii, D. Sanchez-Taltavull, T.J. Perkins, M. Brand & J.A. Ranish. Absolute Quantification of Transcription Factors in Human Erythropoiesis using Selected Reaction Monitoring
Mass Spectrometry.
STAR Protocols
(2020) 1(3): 100216.
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C.
Scott, D.J. Downes, J.M. Brown, R. Beagrie, A-A. Olijnik, M. Gosden, R. Schwessinger, C.A. Fisher,
A. Rose, D.J.P. Ferguson, E. Johnson, Q.A. Hill, S. Okoli, R. Renella, K. Ryan, M. Brand, J. Hughes, N.B.A. Roy, D.R. Higgs,
C. Babbs & V.J. Buckle. Recapitulation of Erythropoiesis in Congenital Dyserythropoietic Anaemia Type I (CDA-I)
Identifies Defects in Differentiation and Nucleolar Abnormalities. Haematologica (2020), https://doi.org/10.3324/haematol.2020.260158
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A.
Gurumurthy,
Q. Wu,
R. Nar,
K. Paulsen, A. Trumbull, R.C. Fishman, M. Brand, J. Strouboulis, Z. Qian & J. Bungert. Lineage TFII-I/Gtf2i
and Erythro-Megakaryopoiesis.
Frontiers in Physiology
(2020), https://doi.org/10.3389/fphys.2020.590180
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S.
Loughran*1,
S. Haas*,
A.C. Wilkinson*,
A. Klein** & M. Brand**.
Lineage Commitment of Hematopoietic Stem Cells and Progenitors:
Insights from Recent Single Cell and Lineage Tracing Technologies. *co-first, **co-last, 1corresponding
Experimental Hematology
(2020), 88:1-6.
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M.
Brand* & E. Morrissey*. Single-cell Fate Decisions of Bipotential Hematopoietic Progenitors. *co-corresponding Current Opinion in Hematology
(2020), 27(4): 232-240
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M.A. Gillespie*, C.G. Palii*,
D. Sanchez-Taltavull*, P. Shannon, W.J.R. Longabaugh, D.J. Downes, K. Sivaraman, H.M. Espinoza, J.R. Hughes, N.D. Price, T.J.
Perkins**, J.A. Ranish** & M. Brand**. Absolute Quantification of Transcription Factors Reveal Principles of Gene Regulation in Erythropoiesis.
*co-first **co-senior
Molecular Cell
(2020), https://doi.org/10.1016/j.molcel.2020.03.03.031
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The Human Erythropoiesis Transcription Factors Website
The Gene Regulatory Network of Erythroid Commitment
Y.
Li*, Z. Liao*, H. Luo, A. Benyoucef, Y. Kang, Q. Lai, S. Dovat, B. Miller, I. Chepelev,
Y. Li, K. Zhao, M. Brand & S. Huang. Alteration
of CTCF-associated Chromatin Neighborhood Inhibits TAL1-driven Oncogenic Transcription Program and Leukemogenesis.
*co-first
Nucleic Acids Research
(2020), 48(6): 3119-3133
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M.
Brand*, K. Nakka, J. Zhu & F.J. Dilworth*. Polycomb/Trithorax Antagonism: Cellular Memory in Stem Cell Fate and Function. *co-corresponding Cell Stem Cell (2019), 24(4):
518-533
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C.G. Palii*, Q. Cheng*, M.A. Gillespie, P. Shannon, M. Mazurczyk,
G. Napolitani, N.D. Price, J.A. Ranish, E. Morrissey**, D.R. Higgs** & M. Brand**. Single cell proteomics reveal that quantitative
changes in co-expressed lineage-specific transcription factors determine cell-fate. *co-first **co-senior Cell Stem Cell (2019), https://doi.org/10.1016/j.stem.2019.02.006
(Featured Article)
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C.G. Palii*, Q. Cheng*, M.A. Gillespie, M. Mazurczyk, G. Napolitani, J.A. Ranish, E. Morrissey**, D.R. Higgs**
& M. Brand** . Single cell proteomics reveal that temporal changes in transcription factors determine cell-fate. *co-first
**co-senior (Pre-print posted on Nov 2, 2018)
R. Rao, A. Ketkar, N. Kedia,
V. Krishnamoorthy, V. Lakshmanan, P. Kumar, A. Mohanty, S.O. Raja, S.D. Kumar, A. Gulyani, C-P. Chaturvedi, M. Brand,
D. Palakodeti & S. Rampalli. KMT1 family methyltransferases
regulate heterochromatin-nuclear periphery tethering via histone and non-histone protein methylation.
EMBO Reports, e4326, 2019
Link
Ketkar, R.A. Rao, N. Kedia, F.
Ravindran, V. Lakshmanan, P. Kumar, A. Mohanty, S.D. Kumar, S.O. Raja, A. Gulyani, C-P. Chaturvedi, M. Brand,
D. Palakodeti & S. Rampalli. Euchromatic histone methyltransferases
regulate peripheral heterochromatin tethering via histone and non-histone protein methylations. (Pre-print posted on BioRxiv on Jan 2, 2018)
J.F. Haddad*, Y. Yang*, Y. Takahashi, M. Joshi, N. Chaudhary, A.R. Woodfin, A. Benyoucef,
S. Yeung, J.S. Brunzelle, G. Skiniotis, M. Brand, A. Shilatifard & J-F. Couture. Structural analysis of the Ash2L/Dpy-30 complex reveals a heterogeneity
in H3K4 methylation. *co-first Structure, 26:1-10 https://doi.org/10.1016/j.str.2018.08.004, 2018
Link
S. Fraineau, C.G Palii, B. McNeill, M. Ritso, W.C.
Shelley, N. Prasain, A. Chu, E. Vion, K. Rieck, S. Nilufar, T.J. Perkins, M.A. Rudnicki, D.S. Allan, M.C. Yoder, E.J. Suuronen
& M. Brand. Epigenetic Activation of Pro-angiogenic Signaling Pathways in Human Endothelial Progenitors Increases
Vasculogenesis. Stem Cell Reports,
9(5): 1573-1587, 2017
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A. Benyoucef, C.G. Palii, C. Wang, C.J. Porter,
A. Chu, F. Dai, V. Tremblay, P. Rakopoulos, K. Singh, S. Huang, F. Pflumio, J. Hebert, J-F. Couture, T.J. Perkins, K. Ge,
F.J. Dilworth & M. Brand. UTX inhibition as a selective epigenetic therapy against TAL1-driven T-cell Acute Lymphoblastic
Leukemia . Genes & Development,
30(5): 508-521, 2016 (Page Cover)
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Supplementary Table 1
Supplementary Table 2
Link
M. Brand. Pharmacologic Control of Chromatin
Looping. Blood,
126(5): 569-570, 2015
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G.A Blobel, D. Bodine, M. Brand,
J. Crispino, M.F.T.R de Bruijn,
D. Nathan, T. Pappayannopoulou, C. Porcher, J. Strouboulis, L. Zon, D.R. Higgs, G. Stamatoyannopoulos & J.D. Engel.
An International Effort to Cure
a Global Health Problem: A report on the 19th Hemoglobin Switching Conference . Experimental Hematology,
43(10): 821-837, 2015
Link
A. Benyoucef & M. Brand. Epigenetic Gene
Regulation and Stem Cell Function. Translational
Epigenetics Series, Epigenetic Gene Expression and Regulation,
7: 149-181, 2015
Link
S. Fraineau, C.G. Palii, D.S. Allan & M. Brand.
Epigenetic Regulation of Endothelial Cell-mediated Vascular Repair. FEBS Journal, 282(9):
1605-1629, 2015 (Page Cover)
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P. Zhang, C.P. Chaturvedi, V. Tremblay, M. Cramet,
J.S. Brunzelle, G. Skiniotis, M. Brand, A. Shilatifard & J.F. Couture. A phosphorylation Switch on RbBP5 regulates
Histone H3 Lys4 Methylation. Genes
and Development, 29: 123-128, 2015
Link
C.G.
Palii, B. Vulesevic, S. Fraineau, E.
Pranckeviciene, A.J. Griffith, A. Chu, H. Faralli, Y. Li, B. McNeill, J. Sun, T.J. Perkins, F.J. Dilworth, C. Perez-Iratxeta, E.J. Suuronen, D.S. Allan & M. Brand. Trichostatin A enhances vascular
repair by injected human endothelial progenitors through increasing the expression of TAL1-dependent genes. Cell Stem Cell,
14(5): 644-657, 2014 (Featured article)
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C-P. Chaturvedi & M. Brand.
EHMT2 (euchromatic histone-lysine N-methyltransferase 2) Atlas of Genetics and Cytogenetics in Oncology
and Haematology, 18(1): 38-45, 2014
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V. Tremblay, P. Zhang, C.P. Chaturvedi, J. Thornton,
J.S. Brunzelle, G. Skiniotis, A. Shilatifard, M. Brand & J.F. Couture. Molecular Basis for DPY-30 Association to
COMPASS-like and NURF Complexes. Structure,
22(12): 1821-1830, 2014
Abstract link
M.R. Mansour,
T. Sanda, L.N. Lawton, X. Li, T. Kreslavsky, C.D. Novina, M. Brand, A. Gutierrez, M.A. Kelliher, C.H. Jamieson, H.
von Boehmer, R.A. Young & A.T. Look. The
TAL1 complex targets the FBXW7 tumor suppressor by activating miR-223 in human T cell acute lymphoblastic leukemia. Journal of Experimental Medicine,
210(8): 1545-1557, 2013
Abstract link
C-P. Chaturvedi, B. Somasundaram, K.Singh, R.L. Carpenedo, W.L. Stanford, F.J. Dilworth & M. Brand. Maintenance of gene
silencing by the coordinate action of the H3K9 methyltransferase G9a/KMT1C and the H3K4 demethylase Jarid1a/KDM5A. Proceedings of the National Academy of Sciences
USA, 109(46): 18845-18850, 2012
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Y. Li, C. Deng, X. Hu, X. Fu, Y. Qiu, M. Brand, K. Zhao & S. Huang. Dynamic interaction between TAL1 and LSD1 regulates TAL1 function in hematopoiesis and
leukemogenesis. Oncogene, Epub ahead
of print February 6, 2012
Abstract link
L. Guevel, J.R. Lavoie, C. Perez-Iratxeta, K. Rouger, L. Dubreil, M. Feron, S. Talon M.
Brand* & L. Megeney*. Quantitative proteomic analysis of dystrophic dog muscle. Journal of Proteome Research 10 (5): 2465-2478,
2011 *share equal contribution as senior authors
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C.G. Palii*, C. Perez-Iratxeta*, Z. Yao, Y. Cao, F. Dai, J. Davison, H. Atkins,
D. Allan, F.J. Dilworth, R. Gentleman, S.J. Tapscott
& M. Brand. Differential genomic targeting of the transcription factor TAL1 in alternate hematopoietic lineages. The
EMBO Journal 30 (3): 494-509, 2011
(Epub Dec 21, 2010) *equal contribution
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Supplementary Tables
C.G. Palii, R. Pasha & M. Brand. Lentiviral-mediated knockdown during ex vivo erythropoiesis of human
hematopoietic stem cells. Journal of Visualized Experiments doi: 10.3791/2813. J Vis Exp. 53, 2011
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S. Sarvan*, V. Avdic*,
V. Tremblay*, C-P. Chaturvedi, P. Zhang, S. Lanouette, A. Blais, J.S. Brunzelle, M. Brand & J-F. Couture. Crystal
structure of the trithorax group protein ASH2L reveals a forkhead-like DNA binding domain. Nature Structural and
Molecular Biology, 18
(7): 857-859, 2011 * equal contribution
Abstract link
A.M. Hosey, C-P Chaturvedi & M. Brand. Crosstalk between histone modifications
maintains the developmental pattern of gene expression on a tissue-specific locus. Epigenetics 5 (4):273-281, 2010
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C-P. Chaturvedi*, A.M. Hosey*, C. Palii, C. Perez-Iratxeta, Y. Nakatani, J.A. Ranish, F.J. Dilworth & M. Brand. Dual role for the methyltransferase G9a in the maintenance of ß-globin
gene transcription in adult erythroid cells. Proceedings of the National Academy of Sciences USA, 106 (43): 18303-18308, 2009
*equal contribution
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A.M.
Hosey & M. Brand. Chromatin-mediated spreading on
active genes. Nature Structural and Molecular Biology 16 (1): 11-13, 2009
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M. Brand, S. Rampalli, C-P. Chaturvedi, and F.J. Dilworth. Analysis of epigenetic modifications of chromatin at specific gene
loci by native chromatin immunoprecipitation (N-ChIP) of nucleosomes isolated using hydroxyapatite chromatography. Nature Protocols
3 (3): 398-409, 2008
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C. Demers, C.P. Chaturvedi, J. A. Ranish, G. Juban, P. Lai, F. Morle, R. Aebersold, F. Dilworth,
M. Groudine and M. Brand. Activator-mediated Recruitment of the MLL2 Methyltransferase Complex to the ß-globin Locus.
Molecular Cell, 27: 573-584, 2007
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J.A Ranish, M. Brand and R. Aebersold. Using stable isotope tagging and MS to characterize protein complexes
and to detect changes in their composition. Methods Mol Biol. 359:17-35, 2007
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A. Kim, S. Song, M. Brand and A. Dean. Nucleosome
and transcription activator antagonism at human ß-globin locus control region DNase I hypersensitive sites. Nucleic Acids Research 35 (17): 5831-5838, 2007
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M. Brand, J. A. Ranish, N. T. Kummer, J. Hamilton, K. Igarashi, C. Francastel, T. Chi, G. R.
Crabtree, R. Aebersold and M. Groudine. Dynamic changes in transcription factors complexes during erythroid differentiation
revealed by quantitative proteomics. Nature Structural and Molecular Biology, 11 (1): 73-80, 2004
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J. Sun, M. Brand, Y. Zenke, S. Tashiro, M. Groudine and K. Igarashi.
Heme regulates dynamics of Bach1 and NF-E2-related factors in the Maf transcription factor network. Proceedings
of the National Academy of Sciences, 101 (6): 1461-1466, 2004
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N. Cavusoglu, M. Brand, L. Tora and A. Van Dorsselaer.
Novel subunits of the TATA Binding Protein Free TAFII-containing transcription complex identified by matrix-assisted laser
desorption/ionization-time of flight mass spectrometry following one dimensional gel electrophoresis. Proteomics,
3 (2): 217-223, 2003
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S. Hardy*, M. Brand*, G. Mittler,
J. Yanagisawa, S. Kato, M. Meisterernst and L. Tora. TATA-binding protein-Free TAF-containing complex
(TFTC) and p300 are both required for efficient transcriptional activation. Journal of Biological Chemistry 277: 32875-32882, 2002
*equal contribution
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M. Brand, J. G. Moggs, M. Oulad-Abdelghani, F. Lejeune, F. J. Dilworth, J. Stevenin, G. Almouzni
and L. Tora. UV-damaged DNA binding protein in the TFTC complex links DNA damage recognition to nucleosome acetylation. The
EMBO Journal 20 (12): 3187-3196, 2001
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M. Brand*, C. Leurent*, V. Mallouh,
L. Tora and P. Schultz. Three dimensional structures of the TAFII-containing
complexes TFIID and TFTC. Science 286: 2151-2153, 1999
*equal contribution
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M. Brand, K. Yamamoto, A. Staub and
L.Tora. Identification of TFTC subunits suggests a role in nucleosome acetylation and signal transduction. Journal
of Biological Chemistry 274 (26): 18285-18289, 1999
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L. Tora, M. Brand, E. Wieczorek and D. Metzger. The role of TAFII30-containing complexes in vertebrate gene regulation. in: Human Frontier
Workshop VII on "Transcription Regulation in Eukaryotes" Eds. P. Chambon, R.D. Kornberg, T. Fukasawa and
C. Coath. HFSP, Strasbourg, France. pp. 162-170, 1999
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E. Wieczorek*, M. Brand*, X. Jacq
and L. Tora. Function of TAFII-containing complex without TBP in transcription by RNA polymerase II. Nature
393: 187-191, 1998
*equal contribution
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Other
Publications
S. McLaughlin, V. Sedlakova, Q. Zhang, B. McNeill, D. Smyth, R. Seymour, D.R. Davis,
M. Ruel, M. Brand, E.I. Alarcon & E.J. Suuronen. Recpmbinant Human Collagen Hydrogel Rapidly Reduces Methlglyoxal
Adducts within Cardiomyocytes Improves Borderzone Contractility after Myocardial Infarction in Mice. Advanced Functional Materials (2022),
https://doi.org/10.1002/adfm.202204076
Link
K. Nakka, S. Hachmer, Z. Mokhtari, R. Kovac, H. Bandukwala, C. Bernard, Y. Li,
G. Xie, C. Liu, M. Fallahi, L.A. Megeney, J. Gondin, B. Chazaud, M. Brand, X. Zha, K. Ge & F.J. Dilworth. JMJD3
activated hyaluronan synthesis drives muscle regeneration in an inflammatory environment. Science (2022), 377(6606): 666-669
Link
D.C.L. Robinson, M. Ritso, G.M. Nelson, Z. Mokhtari, K. Nakka, H. Bandukwala, S.R.
Goldman, P.J. Park, R. Mounier, B. Chazaud, M. Brand, M.A. Rudnicki, K. Adelman & F.J. Dilworth. Negative Elongation
Factor (NELF) Regulates Muscle Progenitor Expansion for Efficient Myofiber Repair and Stem Cell Pool Repopulation. Developmental Cell (2021), 56(7): 1014-1029
Link
T. Q-T. Do, A. Gaudreau-Lapierre, C.G. Palii, V. M. Ferreira Resende, D. Campuzano,
C.S. Aeschimann, M. Brand & L. Trinckle-Mulcahy. A Nuclear Stress Pathway that Parallels Cytoplasmic Stress
Granule Formation.
iScience, 23(11): 101664 doi: 10.1016/j.isci.2020.101664. eCollection 2020
Link
S.Han, D.J. Dennis, A. Balakrishnan, R. Dixit, O. Britz, D. Zinyk, Y. Touahri, T. Olender,
M. Brand, F. Guillemot, D. Kurrasch & C. Schuurmans. A non-canonical role for the proneural gene Neurog1
as a negative regulator of neocortical neurogenesis. Development, 145(19): dev157719 doi: 10.1242/dev.157719, 2018
Link
J. Barrera-Ramirez, J.R. Lavoie, H.B. Maganti, W.L. Stanford, C. Ito, M. Sabloff,
M. Brand, M. Rosu-Myles, Y. Le & D. Allan. Micro RNA profiling of exosomes from marrow-derived mesenchymal
stromal cells in patients with acute myeloid leukemia: implications in leukemogenesis. Stem Cell Reviews and Reports,
13(6): 817-825, https://doi.org/10.1007/s12015-017-9762-0, 2017
Link
H. Faralli, C. Wang, A.K. Nakka, A. Benyoucef, S.
Sebastian, L. Zhuang, A. Chu, C., C.G. Palii, C. Liu, B. Camellato, M. Brand, K. Ge & F.J. Dilworth. H3K27-demethylase
activity of UTX/KDM6A is essential for skeletal muscle regeneration. Journal of Clinical Investigation,
126(4): 1555-1565, 2016
Link
Y. Le, S. Fraineau, P. Chandran, M. Sabloff, M. Brand, J.R. Lavoie, R. Gagne,
M. Rosu-Myles, C.L. Yauk, R.B. Richardson & D.S. Allan. Adipogenic Mesenchymal Stromal Cells from Bone Marrow and their
Hematopoietic Supportive Role: Towards an Understanding of a Permissive Marrow Microenvironment in Acute Myeloid Leukemia.
Stem Cell Reviews and Reports. Epub ahead of print. Dec 9, 2015
Link
M. Andrade-Navarro, F. Kanji, C.G. Palii, M. Brand,
H. Atkins & C. Perez-Iratxeta. A method for cell type marker discovery by high-throughput gene expression analysis of
mixed cell populations. BMC
Biotechnology, 13: 80, 2013
Abstract link
S. Sebastian,
H. Faralli, Z. Yao, P. Rakopoulos, C. Palii, Y. Cao, K. Singh, Q-C. Liu, A. Chu, A. Aziz, M. Brand, S.J. Tapscott
& F.J. Dilworth.
Tissue-specific splicing of a ubiquitously
expressed transcription factor is essential for muscle differentiation.
Genes & Development, 27: 1247-1259, 2013
Abstract link
S. Li, P. Mattar, D.
Zinyk, K. Singh, C-P. Chaturvedi, C. Kovach, R. Dixit, D.M. Kurrasch, Y. Ma, J.A. Chan, V. Wallace, F.J. Dilworth,
M. Brand & C. Schuurmans . GSK3
temporally regulates Neurogenin 2 proneural activity in the neocortex.
Journal of Neuroscience, 32 (23): 7791-7805, 2012
Abstract link
L. Labonté, Y. Li, C.L. Addison,
M. Brand, H. Javidnia, M. Corsten, K. Burns & D.S. Allan .
Distinct profile of vascular progenitor
attachment to extracellular matrix proteins in cancer patients. Clinical
and Investigative Medicine, 35
(2): E86-95, 2012
Abstract link
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